SarcAsM Logo

Getting Started:

  • Installation
  • Quickstart
  • GUI Usage

Tutorials:

  • Structural analysis
  • Motion analysis
  • Batch processing of large data sets
  • Data export
  • Data visualization
  • Training data generation
  • Training of sarcomere U-Net++
  • Training of Z-band 3D U-Net
  • Training of ContractionNet

Sarcomere features:

  • Structural Features
  • Motion Features

API reference:

  • API Reference
SarcAsM
  • Overview: module code

All modules for which code is available

  • contraction_net.annotation
  • contraction_net.contraction_net
  • contraction_net.data
  • contraction_net.losses
  • contraction_net.prediction
  • contraction_net.training
  • contraction_net.utils
  • sarcasm.core
  • sarcasm.exceptions
  • sarcasm.export
  • sarcasm.ioutils
  • sarcasm.meta_data_handler
  • sarcasm.motion
  • sarcasm.plot_utils
  • sarcasm.plots
  • sarcasm.structure
  • sarcasm.training_data_generation
  • sarcasm.utils

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