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gwas-norm 0.3.0a0 documentation

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gwas-norm 0.3.0a0 documentation

Setup

Getting Started with GWAS Normalisation
Setup a configuration file
Environment variables
Building the mapping files
Installing Ensembl VEP
Updating Ensembl VEP

GWAS normalisation

Overview and usage
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Variant mapping

Introduction to variant mapping
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Programmer reference

Command-line endpoints
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- Python endpoints
- BASH endpoints
gwas-norm API
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Testing in GWAS norm

Project admin

Contributing to gwas-norm

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Running the Ensembl mapper on the command line#

Using the Ensembl variant mapper API

Introduction to variant mapping

Copyright © 2022, Chris Finan

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